BLISS 2.0

Binding Site Level Identification of Shared Signal Modules in DNA Regulatory Sequences

About BLISS 2.0
>> An Introduction to Researchers
>> Tutorial
>> Supplement Information

CRM Analysis
>> Cis-Regulatory Modules(CRMs) Search
>> Single Cis-Regulatory Module(CRM) Search

Cis-Regulatory Modules (CRMs) Search
in two sequences

Cis-Regulatory Modules (CRMs) Search in two sequences helps you to identify conserved CRMs harboured in two input sequences.
Please limit the sum of the lengths of the two sequences below 10K bps.

1. SEQUENCE 1

a. Please input a name for the first DNA sequence:

b. Please paste the first DNA sequence (raw sequence) to the following text field:

2. SEQUENCE 2

a. Please input a name for the second DNA sequence:

b. Please paste the second DNA sequence (raw sequence) to the following text field:

AATATAACCCAATAATTTTAACTAACTCGCAATGGACAGGGCAGTAGAGCAGTAGAGTAGAGCATTGCAG
GAAGGATGCAATACTCGGGAATGGAATGCATAACAATGGGCAAGGACCAGGGTTCCGTTTCGCGAGATAA
GGTTCTTTGACGGTTCCTTGACGGTTCCTTGACGGTTCCCTGTGTGCTCTCTGCTCTGTGTTAATCCGTT
TGCCATCAGCAAGATTATTAGTCAATTTTCATATTTCCAGTCGAGTCGCAGTTTTGGTTTCACTTTCCTC
CTTTGCCACTTCTTGCCTTGCCTCATGTGGATGCCGATGCCGATGCCGTTGCCGTTGCCGTTGCCGTTGC
CGACCGACGAGTTAGATTTTATTGCAGCATCTTGAACAATCAACTGGAATTTGGTAACATGCTGCGCGGC
CTAACCCTGGAGATTGCTCTACTTTCGCCTCAATTGAATCGGAGTTAGGCGGAAGACGGCGGACCCTTGC
GACCAAGGGTTGTCTCCTGGCCTCAGGAGTTTCCACAGTCAACGCTTTCGCTGGTTTGTTTATTTGTTTG
TTTGTTTTAGCCAGGATTAGCCCGAGGGCTTGACTTGGAACCCGACCAAAGCCAAGGGCTTTAGGGCATG
CTCAAGAGATCCCTATATCCCTATCCCTGTCGCGATCCCTAAACCGATCCCATTTGGCAATTTCATTAGA
AAGTCATAAAACACACATAATAATGAGATGTCGAAGGGATTAAGATTAAGGGACGCACACACAGGCAGCA
GGATCATTAACGGACTAACGGAATCGGGTTATTTTTTGCGCTCAACCGGACGGAGCTTAACGCTAAGCCA
CAAGCTTAACCCCTTGTGGGCCGCGGCAGGTAAATCGATGACCGATGTCGCTTGCGCAAGGCCCCTACTA
CTCCCCTCCCCTCCCATATGACAACCCACTAACCCTGCCCCCGCCCTCTCCACCACCACTGTACTGTATG
TACAGTTGCCTCCTCTCTGGATGATTATATCATCATAATAAATGTTT

Please check here if you want to search the complementary strand of the second sequence

3. Please choose a binding site score cutoff