BLISS 2.0

Binding Site Level Identification of Shared Signal Modules in DNA Regulatory Sequences

About BLISS 2.0
>> An Introduction to Researchers
>> Tutorial
>> Supplement Information

CRM Analysis
>> Cis-Regulatory Modules(CRMs) Search
>> Single Cis-Regulatory Module(CRM) Search

Single
Cis-Regulatory Module (CRM) Search

Single Cis-Regulatory Module (CRM) Search helps you to identify conserved CRM harboured in both a short DNA sequence and a long DNA sequence.

Please limit the sum of the lengths of the two sequences below 10K bps.

1. Short DNA sequence habouring the CRM

a. Please input a name for the short DNA sequence harbouring the CRM:

b. Please paste the short DNA sequence (raw sequence) harbouring the CRM to the following text field:

2. Searched long DNA sequence
a. Please input a name for the searched long DNA sequence:

b. Please paste the searched long DNA sequence (raw sequence) to the following text field:
AATATAACCCAATAATTTGAACTAACTCAACGACTGGGAGAGTTACTTAGTAATGCATAACAATGAGCGCAGTTGAGGCTGAAACTGAAATTGAAATGTTTGATGCCAAGGGTTTTGGCATTGACTAGAACTCGTCCTGGTCTGGTGTCCTGTGTGCTGTGTCCTGTGTCCTGTGCGTTAATCCGTTTGCCATCAGCGACATTATTAGTCGATTTTCTCAGTTTGGCTCAGTTTCACTTTCGCCTTGCGGATACGAGTTAGATTTTATTGCAGCATCTTGAACAATCGCTCGAACTTGGAACTGAATATGGATTTTGGACACATGCTGTGCTGCGATTGCTCTAGTTTAAGGCCTATGGCTAAGGTGATTTAGGCCGAAATTTTCATTGTCTTTTACTCAAGCTGACCGGGTTACCCTCAGGCAGCGACTTTTGATTTAACTTTCAGCAAACGACTTTAACTCCCTTTTCGACTTGCCGGACTTTCCACAGGCCACAACATTTTGTTTATTTGTTTATATTGTGGATTATAGAGAGAGAGAGAGAGGCAGACAGGGAGTGAGAGATAGAGAGAGAGAGGGGCTTTGGGCGCGCTGATCCACACGCATTTTCATTAGAAAGCCATAAAAACGCATAATTATGGCAACAGGGATTAGCCACACGCACATATATGTATATGTATATGACATAATTAGCGGATTCTGAAATTGGGTTATTTTTGTCCTCTTTTTTCTTGGCCCAGCTTAACCCTAAGCCAAACCCAAGCCTAGACCCAAGCAGGTAACGGCCAGGCGGACAGCTCAATAGCTTACGCAAGCAAAACAAAA
Please check here if you want to search the complementary strand of the long sequence
3. Please choose a binding site score cutoff